Reference documentation for deal.II version Git 9deac93 2014-10-24 21:41:49 -0500
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Groups Pages
Public Types | Public Member Functions | Private Member Functions | Private Attributes | List of all members
SparseBlockVanka< number > Class Template Reference

#include <deal.II/lac/sparse_vanka.h>

Inheritance diagram for SparseBlockVanka< number >:
[legend]

Public Types

enum  BlockingStrategy { index_intervals, adaptive }
 
typedef types::global_dof_index size_type
 
- Public Types inherited from SparseVanka< number >
typedef types::global_dof_index size_type
 

Public Member Functions

 SparseBlockVanka (const SparseMatrix< number > &M, const std::vector< bool > &selected, const unsigned int n_blocks, const BlockingStrategy blocking_strategy, const bool conserve_memory=false, const unsigned int n_threads=multithread_info.n_threads())
 
template<typename number2 >
void vmult (Vector< number2 > &dst, const Vector< number2 > &src) const
 
std::size_t memory_consumption () const
 
- Public Member Functions inherited from SparseVanka< number >
 SparseVanka (const SparseMatrix< number > &M, const std::vector< bool > &selected, const bool conserve_memory=false, const unsigned int n_threads=multithread_info.n_threads())
 
 ~SparseVanka ()
 
template<typename number2 >
void vmult (Vector< number2 > &dst, const Vector< number2 > &src) const
 

Private Member Functions

void compute_dof_masks (const SparseMatrix< number > &M, const std::vector< bool > &selected, const BlockingStrategy blocking_strategy)
 

Private Attributes

const unsigned int n_blocks
 
std::vector< std::vector< bool > > dof_masks
 

Additional Inherited Members

- Protected Member Functions inherited from SparseVanka< number >
template<typename number2 >
void apply_preconditioner (Vector< number2 > &dst, const Vector< number2 > &src, const std::vector< bool > *const dof_mask=0) const
 
std::size_t memory_consumption () const
 

Detailed Description

template<typename number>
class SparseBlockVanka< number >

Block version of the sparse Vanka preconditioner. This class divides the matrix into blocks and works on the diagonal blocks only, which of course reduces the efficiency as preconditioner, but is perfectly parallelizable. The constructor takes a parameter into how many blocks the matrix shall be subdivided and then lets the underlying class do the work. Division of the matrix is done in several ways which are described in detail below.

This class is probably useless if you don't have a multiprocessor system, since then the amount of work per preconditioning step is the same as for the SparseVanka class, but preconditioning properties are worse. On the other hand, if you have a multiprocessor system, the worse preconditioning quality (leading to more iterations of the linear solver) usually is well balanced by the increased speed of application due to the parallelization, leading to an overall decrease in elapsed wall-time for solving your linear system. It should be noted that the quality as preconditioner reduces with growing number of blocks, so there may be an optimal value (in terms of wall-time per linear solve) for the number of blocks.

To facilitate writing portable code, if the number of blocks into which the matrix is to be subdivided, is set to one, then this class acts just like the SparseVanka class. You may therefore want to set the number of blocks equal to the number of processors you have.

Note that the parallelization is done if deal.II was configured for multithread use and that the number of threads which is spawned equals the number of blocks. This is reasonable since you will not want to set the number of blocks unnecessarily large, since, as mentioned, this reduces the preconditioning properties.

Splitting the matrix into blocks

Splitting the matrix into blocks is always done in a way such that the blocks are not necessarily of equal size, but such that the number of selected degrees of freedom for which a local system is to be solved is equal between blocks. The reason for this strategy to subdivision is load-balancing for multithreading. There are several possibilities to actually split the matrix into blocks, which are selected by the flag blocking_strategy that is passed to the constructor. By a block, we will in the sequel denote a list of indices of degrees of freedom; the algorithm will work on each block separately, i.e. the solutions of the local systems corresponding to a degree of freedom of one block will only be used to update the degrees of freedom belonging to the same block, but never to update degrees of freedoms of other blocks. A block can be a consecutive list of indices, as in the first alternative below, or a nonconsecutive list of indices. Of course, we assume that the intersection of each two blocks is empty and that the union of all blocks equals the interval [0,N), where N is the number of degrees of freedom of the system of equations.

Typical results

As a prototypical test case, we use a nonlinear problem from optimization, which leads to a series of saddle point problems, each of which is solved using GMRES with Vanka as preconditioner. The equation had approx. 850 degrees of freedom. With the non-blocked version SparseVanka (or SparseBlockVanka with n_blocks==1), the following numbers of iterations is needed to solver the linear system in each nonlinear step:

*   101 68 64 53 35 21
* 

With four blocks, we need the following numbers of iterations

*   124 88 83 66 44 28
* 

As can be seen, more iterations are needed. However, in terms of computing time, the first version needs 72 seconds wall time (and 79 seconds CPU time, which is more than wall time since some other parts of the program were parallelized as well), while the second version needed 53 second wall time (and 110 seconds CPU time) on a four processor machine. The total time is in both cases dominated by the linear solvers. In this case, it is therefore worth while using the blocked version of the preconditioner if wall time is more important than CPU time.

The results with the block version above were obtained with the first blocking strategy and the degrees of freedom were not numbered by component. Using the second strategy does not much change the numbers of iterations (at most by one in each step) and they also do not change when the degrees of freedom are sorted by component, while the first strategy significantly deteriorated.

Author
Wolfgang Bangerth, 2000

Definition at line 35 of file sparse_vanka.h.

Member Typedef Documentation

template<typename number >
typedef types::global_dof_index SparseBlockVanka< number >::size_type

Declate type for container size.

Definition at line 522 of file sparse_vanka.h.

Member Enumeration Documentation

template<typename number >
enum SparseBlockVanka::BlockingStrategy

Enumeration of the different methods by which the DoFs are distributed to the blocks on which we are to work.

Definition at line 530 of file sparse_vanka.h.

Constructor & Destructor Documentation

template<typename number >
SparseBlockVanka< number >::SparseBlockVanka ( const SparseMatrix< number > &  M,
const std::vector< bool > &  selected,
const unsigned int  n_blocks,
const BlockingStrategy  blocking_strategy,
const bool  conserve_memory = false,
const unsigned int  n_threads = multithread_info.n_threads() 
)

Constructor. Pass all arguments except for n_blocks to the base class.

Member Function Documentation

template<typename number >
template<typename number2 >
void SparseBlockVanka< number >::vmult ( Vector< number2 > &  dst,
const Vector< number2 > &  src 
) const

Apply the preconditioner.

template<typename number >
std::size_t SparseBlockVanka< number >::memory_consumption ( ) const

Determine an estimate for the memory consumption (in bytes) of this object.

template<typename number >
void SparseBlockVanka< number >::compute_dof_masks ( const SparseMatrix< number > &  M,
const std::vector< bool > &  selected,
const BlockingStrategy  blocking_strategy 
)
private

Compute the contents of the field dof_masks. This function is called from the constructor.

Member Data Documentation

template<typename number >
const unsigned int SparseBlockVanka< number >::n_blocks
private

Store the number of blocks.

Definition at line 565 of file sparse_vanka.h.

template<typename number >
std::vector<std::vector<bool> > SparseBlockVanka< number >::dof_masks
private

In this field, we precompute for each block which degrees of freedom belong to it. Thus, if dof_masks[i][j]==true, then DoF j belongs to block i. Of course, no other dof_masks[l][j] may be true for l!=i. This computation is done in the constructor, to avoid recomputing each time the preconditioner is called.

Definition at line 581 of file sparse_vanka.h.


The documentation for this class was generated from the following file: